Downloading Bluejay

There are several ways to launch Bluejay, from a full-fledged application to a simple applet. Please choose the option most suitable for your needs. Users of Bluejay are kindly requested to cite the article:

Soh, J., Gordon, P.M.K., Taschuk, M.L., Dong, A., Ah-Seng, A.C., Turinsky, A.L., Sensen, C.W. (2008) Bluejay 1.0: genome browsing and comparison with rich customization provision and dynamic resource linking. BMC Bioinformatics 9:450. [online]
One-Click Start Data Suitability System Requirements Advantages Disadvantages Last Updated
Application (Recommended) Any data size Java Runtime Environment
  • Option for desktop launch icon
  • Fast startup
  • Faster, no memory limitations
  • Allows for off-line usage
  • Requires program-installation privilege on your machine
  • Large initial download
  • No auto-updating of code (manual redownload required)
June 30, 2010 (v1.3)
Web Start Any data size Java Web Start Utility
  • Option for desktop launch icon
  • Fast startup from second usage onward
  • Auto-updating of code
  • Faster, no memory limitations
  • Requires Java Web Start utility, or program-installation privilege on your machine
June 30, 2010 (v1.3)
Applet

(If applet runs out of memory...)
Up to plasmid-sized genome annotation Java Plug-in
  • No program installation privileges required
  • Suitable for systems with <64MB of memory
  • May be slow to start up every time
  • Runs slower because of applet memory-usage restrictions, especially for microbial genome sizes and up
June 30, 2010 (v1.3)

Data files for Current Protocols in Bioinformatics Unit 10.9: The Bluejay Genome Browser

These data files accompany the following article:
Soh, J., Gordon, P.M.K. Sensen, C.W. (2012) The Bluejay Genome Browser. Current Protocols in Bioinformatics 37:10.9.1-10.9.23. [online]
Sulfolobus solfataricus P2 genome file
Microarray data for the Sulfolobus solfataricus P2 genome
Template XML file for preparing your own input file for Bluejay

Sample bacterial genomes for genome comparison

Chlamydia muridarum genome
Chlamydia trachomatis genome